streaming job reading from kafka stuck while cancelling
Locked
streaming job reading from kafka stuck while cancelling
 
|
Hi,
from time to time when we cancel streaming jobs (or they are failing for some reason) we encounter: 2016-03-09 10:25:29,799 [Canceler for Source: read objects from topic: (...) ' did not react to cancelling signal, but is stuck in method: java.lang.Object.wait(Native Method) java.lang.Thread.join(Thread.java:1253) org.apache.flink.streaming.connectors.kafka.FlinkKafkaConsumer09.run(FlinkKafkaConsumer09.java:329) org.apache.flink.streaming.api.operators.StreamSource.run(StreamSource.java:78) org.apache.flink.streaming.runtime.tasks.SourceStreamTask.run(SourceStreamTask.java:56) org.apache.flink.streaming.runtime.tasks.StreamTask.invoke(StreamTask.java:224) org.apache.flink.runtime.taskmanager.Task.run(Task.java:559) java.lang.Thread.run(Thread.java:745) Now, relevant stacktrace is this: "Thread-626104" #1244254 daemon prio=5 os_prio=0 tid=... nid=0x2e96 in Object.wait() [0x00007f2bac847000] java.lang.Thread.State: TIMED_WAITING (on object monitor) at java.lang.Object.wait(Native Method) at org.apache.flink.runtime.io.network.buffer.LocalBufferPool.requestBuffer(LocalBufferPool.java:163) - locked <0x000000041ae00180> (a java.util.ArrayDeque) at org.apache.flink.runtime.io.network.buffer.LocalBufferPool.requestBufferBlocking(LocalBufferPool.java:133) at org.apache.flink.runtime.io.network.api.writer.RecordWriter.emit(RecordWriter.java:92) - locked <0x00000004be0002f0> (a org.apache.flink.runtime.io.network.api.serialization.SpanningRecordSerializer) at org.apache.flink.streaming.runtime.io.StreamRecordWriter.emit(StreamRecordWriter.java:86) at org.apache.flink.streaming.runtime.io.RecordWriterOutput.collect(RecordWriterOutput.java:78) at org.apache.flink.streaming.runtime.io.RecordWriterOutput.collect(RecordWriterOutput.java:39) at org.apache.flink.streaming.api.operators.TimestampedCollector.collect(TimestampedCollector.java:51) at org.apache.flink.streaming.api.scala.DataStream$$anon$6$$anonfun$flatMap$1.apply(DataStream.scala:541) at org.apache.flink.streaming.api.scala.DataStream$$anon$6$$anonfun$flatMap$1.apply(DataStream.scala:541) at scala.collection.immutable.List.foreach(List.scala:381) at org.apache.flink.streaming.api.scala.DataStream$$anon$6.flatMap(DataStream.scala:541) at org.apache.flink.streaming.api.operators.StreamFlatMap.processElement(StreamFlatMap.java:48) at org.apache.flink.streaming.runtime.tasks.OperatorChain$CopyingChainingOutput.collect(OperatorChain.java:351) at org.apache.flink.streaming.runtime.tasks.OperatorChain$CopyingChainingOutput.collect(OperatorChain.java:337) at org.apache.flink.streaming.api.operators.StreamFilter.processElement(StreamFilter.java:38) at org.apache.flink.streaming.runtime.tasks.OperatorChain$CopyingChainingOutput.collect(OperatorChain.java:351) at org.apache.flink.streaming.runtime.tasks.OperatorChain$CopyingChainingOutput.collect(OperatorChain.java:337) at org.apache.flink.streaming.api.operators.StreamFilter.processElement(StreamFilter.java:38) at org.apache.flink.streaming.runtime.tasks.OperatorChain$CopyingChainingOutput.collect(OperatorChain.java:351) at org.apache.flink.streaming.runtime.tasks.OperatorChain$CopyingChainingOutput.collect(OperatorChain.java:337) at org.apache.flink.streaming.api.operators.StreamMap.processElement(StreamMap.java:39) at org.apache.flink.streaming.runtime.tasks.OperatorChain$CopyingChainingOutput.collect(OperatorChain.java:351) at org.apache.flink.streaming.runtime.tasks.OperatorChain$CopyingChainingOutput.collect(OperatorChain.java:337) at org.apache.flink.streaming.api.operators.StreamMap.processElement(StreamMap.java:39) at org.apache.flink.streaming.runtime.tasks.OperatorChain$CopyingChainingOutput.collect(OperatorChain.java:351) at org.apache.flink.streaming.runtime.tasks.OperatorChain$CopyingChainingOutput.collect(OperatorChain.java:337) at org.apache.flink.streaming.api.operators.StreamSource$ManualWatermarkContext.collect(StreamSource.java:318) - locked <0x000000041ae001c8> (a java.lang.Object) at org.apache.flink.streaming.connectors.kafka.FlinkKafkaConsumer09$ConsumerThread.run(FlinkKafkaConsumer09.java:473) - locked <0x000000041ae001c8> (a java.lang.Object) and also: "OutputFlusher" #1244231 daemon prio=5 os_prio=0 tid=0x00007f2a39d4e800 nid=0x2e7d waiting for monitor entry [0x00007f2a3e5e4000] java.lang.Thread.State: BLOCKED (on object monitor) at org.apache.flink.runtime.io.network.api.writer.RecordWriter.flush(RecordWriter.java:172) - waiting to lock <0x00000004be0002f0> (a org.apache.flink.runtime.io.network.api.serialization.SpanningRecordSerializer) at org.apache.flink.streaming.runtime.io.StreamRecordWriter$OutputFlusher.run(StreamRecordWriter.java:176) - looks like source tries to process remaining kafka messages, but it is stuck on partitioning by key. I managed to take heap dump and look what's going on inside LocalBufferPool - availableMemorySegments queue is empty - numberOfRequestedMemorySegments == currentPoolSize == 16 - there are not registeredListeners Now, it seems that loop in LocalBufferPool#142 without end, waiting for buffer recycle - but from what I see it won't happen because OutputFlusher is blocked by this loop. The problem occurs (it seems) when more or less at the same time as job cancellation we start new job (e.g. taskmanager is restarted, one job is failing because of some problem, and another one is just starting) - so I wonder could it be some problem with setNumBuffers method - although it looks synchronized enough... We are using version 1.0.0 (RC4) btw I hope to dig further into this - but for now this is all I managed to find. thanks, maciek |
Re: streaming job reading from kafka stuck while cancelling
|
|
Hi! Thanks for the debugging this, I think there is in fact an issue in the 0.9 consumer. I'll open a ticket for it, will try to fix that as soon as possible... Stephan On Wed, Mar 9, 2016 at 1:59 PM, Maciek Próchniak <[hidden email]> wrote:
|
Re: streaming job reading from kafka stuck while cancelling
|
|
Here is the Jira issue: https://issues.apache.org/jira/browse/FLINK-3595 On Wed, Mar 9, 2016 at 2:06 PM, Stephan Ewen <[hidden email]> wrote:
|
Re: streaming job reading from kafka stuck while cancelling
|
|
Thanks,
that makes sense... Guess I'll try some dirty workaround for now by interrupting consumer thread if it's doesn't finish after some time... maciek On 09/03/2016 14:42, Stephan Ewen
wrote:
|
Re: streaming job reading from kafka stuck while cancelling
|
|
The reason that the consumer thread is not interrupted (which is the reason why there is a separate consumer thread in the first place) is that Kafka has a bug (or design issue) where thread interrupting may lead to a deadlock in the thread. Interrupting the thread would need to make sure that interruption never happens while the thread is in the Kafka function stack, only while it is in Flink code. On Wed, Mar 9, 2016 at 4:25 PM, Maciek Próchniak <[hidden email]> wrote:
|
Re: streaming job reading from kafka stuck while cancelling
|
|
In reply to this post by Maciek Próchniak
Hey Maciek! I'm working on the other proposed fix by closing the
buffer pool early. I expect the fix to make it into the next bugfix release 1.0.1 (or 1.0.2 if 1.0.1 comes very soon). – Ufuk |
«
Return to (DEPRECATED) Apache Flink User Mailing List archive.
|
1 view|%1 views
| Free forum by Nabble | Edit this page |