Standalone HA cluster: Fatal error occurred in the cluster entrypoint.

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Standalone HA cluster: Fatal error occurred in the cluster entrypoint.

Olga Luganska
Hello,

I am running flink 1.6.1 standalone HA cluster. Today I am unable to start cluster because of "Fatal error in cluster entrypoint"
(I used to see this error when running flink 1.5 version, after upgrade to 1.6.1 (which had a fix for this bug) everything worked well for a while)

Question: what exactly needs to be done to clean "state handle store"?

2018-11-15 15:09:53,181 DEBUG org.apache.flink.runtime.rpc.akka.FencedAkkaRpcActor          - Fencing token not set: Ignoring message LocalFencedMessage(null, org.apache.flink.runtime.rpc.messages.RunAsync@21fd224c) because the fencing token is null.

2018-11-15 15:09:53,182 ERROR org.apache.flink.runtime.entrypoint.ClusterEntrypoint         - Fatal error occurred in the cluster entrypoint.

java.lang.RuntimeException: org.apache.flink.util.FlinkException: Could not retrieve submitted JobGraph from state handle under /e13034f83a80072204facb2cec9ea6a3. This indicates that the retrieved state handle is broken. Try cleaning the state handle store.

        at org.apache.flink.util.ExceptionUtils.rethrow(ExceptionUtils.java:199)

        at org.apache.flink.util.function.FunctionUtils.lambda$uncheckedFunction$1(FunctionUtils.java:61)

        at java.util.concurrent.CompletableFuture.uniApply(CompletableFuture.java:602)

        at java.util.concurrent.CompletableFuture$UniApply.tryFire(CompletableFuture.java:577)

        at java.util.concurrent.CompletableFuture$Completion.run(CompletableFuture.java:442)

        at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:39)

        at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:415)

        at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)

        at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)

        at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)

        at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)

Caused by: org.apache.flink.util.FlinkException: Could not retrieve submitted JobGraph from state handle under /e13034f83a80072204facb2cec9ea6a3. This indicates that the retrieved state handle is broken. Try cleaning the state handle store.

        at org.apache.flink.runtime.jobmanager.ZooKeeperSubmittedJobGraphStore.recoverJobGraph(ZooKeeperSubmittedJobGraphStore.java:208)

        at org.apache.flink.runtime.dispatcher.Dispatcher.recoverJob(Dispatcher.java:692)

        at org.apache.flink.runtime.dispatcher.Dispatcher.recoverJobGraphs(Dispatcher.java:677)

        at org.apache.flink.runtime.dispatcher.Dispatcher.recoverJobs(Dispatcher.java:658)

        at org.apache.flink.runtime.dispatcher.Dispatcher.lambda$null$26(Dispatcher.java:817)

        at org.apache.flink.util.function.FunctionUtils.lambda$uncheckedFunction$1(FunctionUtils.java:59)

        ... 9 more

Caused by: java.io.FileNotFoundException: /checkpoint_repo/ha/submittedJobGraphdd865937d674 (No such file or directory)

        at java.io.FileInputStream.open0(Native Method)

        at java.io.FileInputStream.open(FileInputStream.java:195)

        at java.io.FileInputStream.<init>(FileInputStream.java:138)

        at org.apache.flink.core.fs.local.LocalDataInputStream.<init>(LocalDataInputStream.java:50)

        at org.apache.flink.core.fs.local.LocalFileSystem.open(LocalFileSystem.java:142)

        at org.apache.flink.runtime.state.filesystem.FileStateHandle.openInputStream(FileStateHandle.java:68)

        at org.apache.flink.runtime.state.RetrievableStreamStateHandle.openInputStream(RetrievableStreamStateHandle.java:64)

        at org.apache.flink.runtime.state.RetrievableStreamStateHandle.retrieveState(RetrievableStreamStateHandle.java:57)

        at org.apache.flink.runtime.jobmanager.ZooKeeperSubmittedJobGraphStore.recoverJobGraph(ZooKeeperSubmittedJobGraphStore.java:202)

        ... 14 more

2018-11-15 15:09:53,185 INFO  org.apache.flink.runtime.blob.TransientBlobCache              - Shutting down BLOB cache


thank you,

Olga 


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Re: Standalone HA cluster: Fatal error occurred in the cluster entrypoint.

miki haiat
I "solved" this issue by cleaning the zookeeper information and start the cluster again all the the checkpoint and job graph data will be erased and basacly you will start a new cluster...

It's happened to me allot on a 1.5.x  
On a 1.6 things are running perfect .
I'm not sure way this error is back again on 1.6.1 ?


On Fri, 16 Nov 2018, 0:42 Olga Luganska <[hidden email] wrote:
Hello,

I am running flink 1.6.1 standalone HA cluster. Today I am unable to start cluster because of "Fatal error in cluster entrypoint"
(I used to see this error when running flink 1.5 version, after upgrade to 1.6.1 (which had a fix for this bug) everything worked well for a while)

Question: what exactly needs to be done to clean "state handle store"?

2018-11-15 15:09:53,181 DEBUG org.apache.flink.runtime.rpc.akka.FencedAkkaRpcActor          - Fencing token not set: Ignoring message LocalFencedMessage(null, org.apache.flink.runtime.rpc.messages.RunAsync@21fd224c) because the fencing token is null.

2018-11-15 15:09:53,182 ERROR org.apache.flink.runtime.entrypoint.ClusterEntrypoint         - Fatal error occurred in the cluster entrypoint.

java.lang.RuntimeException: org.apache.flink.util.FlinkException: Could not retrieve submitted JobGraph from state handle under /e13034f83a80072204facb2cec9ea6a3. This indicates that the retrieved state handle is broken. Try cleaning the state handle store.

        at org.apache.flink.util.ExceptionUtils.rethrow(ExceptionUtils.java:199)

        at org.apache.flink.util.function.FunctionUtils.lambda$uncheckedFunction$1(FunctionUtils.java:61)

        at java.util.concurrent.CompletableFuture.uniApply(CompletableFuture.java:602)

        at java.util.concurrent.CompletableFuture$UniApply.tryFire(CompletableFuture.java:577)

        at java.util.concurrent.CompletableFuture$Completion.run(CompletableFuture.java:442)

        at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:39)

        at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:415)

        at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)

        at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)

        at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)

        at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)

Caused by: org.apache.flink.util.FlinkException: Could not retrieve submitted JobGraph from state handle under /e13034f83a80072204facb2cec9ea6a3. This indicates that the retrieved state handle is broken. Try cleaning the state handle store.

        at org.apache.flink.runtime.jobmanager.ZooKeeperSubmittedJobGraphStore.recoverJobGraph(ZooKeeperSubmittedJobGraphStore.java:208)

        at org.apache.flink.runtime.dispatcher.Dispatcher.recoverJob(Dispatcher.java:692)

        at org.apache.flink.runtime.dispatcher.Dispatcher.recoverJobGraphs(Dispatcher.java:677)

        at org.apache.flink.runtime.dispatcher.Dispatcher.recoverJobs(Dispatcher.java:658)

        at org.apache.flink.runtime.dispatcher.Dispatcher.lambda$null$26(Dispatcher.java:817)

        at org.apache.flink.util.function.FunctionUtils.lambda$uncheckedFunction$1(FunctionUtils.java:59)

        ... 9 more

Caused by: java.io.FileNotFoundException: /checkpoint_repo/ha/submittedJobGraphdd865937d674 (No such file or directory)

        at java.io.FileInputStream.open0(Native Method)

        at java.io.FileInputStream.open(FileInputStream.java:195)

        at java.io.FileInputStream.<init>(FileInputStream.java:138)

        at org.apache.flink.core.fs.local.LocalDataInputStream.<init>(LocalDataInputStream.java:50)

        at org.apache.flink.core.fs.local.LocalFileSystem.open(LocalFileSystem.java:142)

        at org.apache.flink.runtime.state.filesystem.FileStateHandle.openInputStream(FileStateHandle.java:68)

        at org.apache.flink.runtime.state.RetrievableStreamStateHandle.openInputStream(RetrievableStreamStateHandle.java:64)

        at org.apache.flink.runtime.state.RetrievableStreamStateHandle.retrieveState(RetrievableStreamStateHandle.java:57)

        at org.apache.flink.runtime.jobmanager.ZooKeeperSubmittedJobGraphStore.recoverJobGraph(ZooKeeperSubmittedJobGraphStore.java:202)

        ... 14 more

2018-11-15 15:09:53,185 INFO  org.apache.flink.runtime.blob.TransientBlobCache              - Shutting down BLOB cache


thank you,

Olga 


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Re: Standalone HA cluster: Fatal error occurred in the cluster entrypoint.

Olga Luganska
Hi, Miki

Thank you for reply!

I have deleted zookeeper data and was able to restart cluster.

Olga

Sent from my iPhone

On Nov 16, 2018, at 4:38 AM, miki haiat <[hidden email]> wrote:

I "solved" this issue by cleaning the zookeeper information and start the cluster again all the the checkpoint and job graph data will be erased and basacly you will start a new cluster...

It's happened to me allot on a 1.5.x  
On a 1.6 things are running perfect .
I'm not sure way this error is back again on 1.6.1 ?


On Fri, 16 Nov 2018, 0:42 Olga Luganska <[hidden email] wrote:
Hello,

I am running flink 1.6.1 standalone HA cluster. Today I am unable to start cluster because of "Fatal error in cluster entrypoint"
(I used to see this error when running flink 1.5 version, after upgrade to 1.6.1 (which had a fix for this bug) everything worked well for a while)

Question: what exactly needs to be done to clean "state handle store"?

2018-11-15 15:09:53,181 DEBUG org.apache.flink.runtime.rpc.akka.FencedAkkaRpcActor          - Fencing token not set: Ignoring message LocalFencedMessage(null, org.apache.flink.runtime.rpc.messages.RunAsync@21fd224c) because the fencing token is null.

2018-11-15 15:09:53,182 ERROR org.apache.flink.runtime.entrypoint.ClusterEntrypoint         - Fatal error occurred in the cluster entrypoint.

java.lang.RuntimeException: org.apache.flink.util.FlinkException: Could not retrieve submitted JobGraph from state handle under /e13034f83a80072204facb2cec9ea6a3. This indicates that the retrieved state handle is broken. Try cleaning the state handle store.

        at org.apache.flink.util.ExceptionUtils.rethrow(ExceptionUtils.java:199)

        at org.apache.flink.util.function.FunctionUtils.lambda$uncheckedFunction$1(FunctionUtils.java:61)

        at java.util.concurrent.CompletableFuture.uniApply(CompletableFuture.java:602)

        at java.util.concurrent.CompletableFuture$UniApply.tryFire(CompletableFuture.java:577)

        at java.util.concurrent.CompletableFuture$Completion.run(CompletableFuture.java:442)

        at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:39)

        at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:415)

        at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)

        at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)

        at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)

        at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)

Caused by: org.apache.flink.util.FlinkException: Could not retrieve submitted JobGraph from state handle under /e13034f83a80072204facb2cec9ea6a3. This indicates that the retrieved state handle is broken. Try cleaning the state handle store.

        at org.apache.flink.runtime.jobmanager.ZooKeeperSubmittedJobGraphStore.recoverJobGraph(ZooKeeperSubmittedJobGraphStore.java:208)

        at org.apache.flink.runtime.dispatcher.Dispatcher.recoverJob(Dispatcher.java:692)

        at org.apache.flink.runtime.dispatcher.Dispatcher.recoverJobGraphs(Dispatcher.java:677)

        at org.apache.flink.runtime.dispatcher.Dispatcher.recoverJobs(Dispatcher.java:658)

        at org.apache.flink.runtime.dispatcher.Dispatcher.lambda$null$26(Dispatcher.java:817)

        at org.apache.flink.util.function.FunctionUtils.lambda$uncheckedFunction$1(FunctionUtils.java:59)

        ... 9 more

Caused by: java.io.FileNotFoundException: /checkpoint_repo/ha/submittedJobGraphdd865937d674 (No such file or directory)

        at java.io.FileInputStream.open0(Native Method)

        at java.io.FileInputStream.open(FileInputStream.java:195)

        at java.io.FileInputStream.<init>(FileInputStream.java:138)

        at org.apache.flink.core.fs.local.LocalDataInputStream.<init>(LocalDataInputStream.java:50)

        at org.apache.flink.core.fs.local.LocalFileSystem.open(LocalFileSystem.java:142)

        at org.apache.flink.runtime.state.filesystem.FileStateHandle.openInputStream(FileStateHandle.java:68)

        at org.apache.flink.runtime.state.RetrievableStreamStateHandle.openInputStream(RetrievableStreamStateHandle.java:64)

        at org.apache.flink.runtime.state.RetrievableStreamStateHandle.retrieveState(RetrievableStreamStateHandle.java:57)

        at org.apache.flink.runtime.jobmanager.ZooKeeperSubmittedJobGraphStore.recoverJobGraph(ZooKeeperSubmittedJobGraphStore.java:202)

        ... 14 more

2018-11-15 15:09:53,185 INFO  org.apache.flink.runtime.blob.TransientBlobCache              - Shutting down BLOB cache


thank you,

Olga 


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Re: Standalone HA cluster: Fatal error occurred in the cluster entrypoint.

Alexander Smirnov
Hi all,

I am getting similar exception while upgrading from Flink 1.4 to 1.6:

```
06 Feb 2019 14:37:34,080 ERROR org.apache.flink.runtime.entrypoint.ClusterEntrypoint - Fatal error occurred in the cluster entrypoint.
java.lang.RuntimeException: org.apache.flink.util.FlinkException: Could not retrieve submitted JobGraph from state handle under /689f43070c701826e19ac24841050ea1. This indicates that the retrieved state handle is broken. Try cleaning the state handle store.
    at org.apache.flink.util.ExceptionUtils.rethrow(ExceptionUtils.java:199)
    at org.apache.flink.util.function.FunctionUtils.lambda$uncheckedFunction$2(FunctionUtils.java:74)
    at java.util.concurrent.CompletableFuture.uniApply(CompletableFuture.java:602)
    at java.util.concurrent.CompletableFuture$UniApply.tryFire(CompletableFuture.java:577)
    at java.util.concurrent.CompletableFuture$Completion.run(CompletableFuture.java:442)
    at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:39)
    at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:415)
    at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
    at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
    at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
    at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
Caused by: org.apache.flink.util.FlinkException: Could not retrieve submitted JobGraph from state handle under /689f43070c701826e19ac24841050ea1. This indicates that the retrieved state handle is broken. Try cleaning the state handle store.
    at org.apache.flink.runtime.jobmanager.ZooKeeperSubmittedJobGraphStore.recoverJobGraph(ZooKeeperSubmittedJobGraphStore.java:208)
    at org.apache.flink.runtime.dispatcher.Dispatcher.recoverJob(Dispatcher.java:696)
    at org.apache.flink.runtime.dispatcher.Dispatcher.recoverJobGraphs(Dispatcher.java:681)
    at org.apache.flink.runtime.dispatcher.Dispatcher.recoverJobs(Dispatcher.java:662)
    at org.apache.flink.runtime.dispatcher.Dispatcher.lambda$null$26(Dispatcher.java:821)
    at org.apache.flink.util.function.FunctionUtils.lambda$uncheckedFunction$2(FunctionUtils.java:72)
    ... 9 more
Caused by: java.io.InvalidClassException: org.apache.flink.runtime.jobgraph.tasks.CheckpointCoordinatorConfiguration; local class incompatible: stream classdesc serialVersionUID = -647384516034982626, local class serialVersionUID = 2
```

Is it safe to clean Zookeeper state as it is suggested in logs? What kind of information I am losing?

Thank you, Alexander

On Fri, Nov 16, 2018 at 7:46 PM Olga Luganska <[hidden email]> wrote:
Hi, Miki

Thank you for reply!

I have deleted zookeeper data and was able to restart cluster.

Olga

Sent from my iPhone

On Nov 16, 2018, at 4:38 AM, miki haiat <[hidden email]> wrote:

I "solved" this issue by cleaning the zookeeper information and start the cluster again all the the checkpoint and job graph data will be erased and basacly you will start a new cluster...

It's happened to me allot on a 1.5.x  
On a 1.6 things are running perfect .
I'm not sure way this error is back again on 1.6.1 ?


On Fri, 16 Nov 2018, 0:42 Olga Luganska <[hidden email] wrote:
Hello,

I am running flink 1.6.1 standalone HA cluster. Today I am unable to start cluster because of "Fatal error in cluster entrypoint"
(I used to see this error when running flink 1.5 version, after upgrade to 1.6.1 (which had a fix for this bug) everything worked well for a while)

Question: what exactly needs to be done to clean "state handle store"?

2018-11-15 15:09:53,181 DEBUG org.apache.flink.runtime.rpc.akka.FencedAkkaRpcActor          - Fencing token not set: Ignoring message LocalFencedMessage(null, org.apache.flink.runtime.rpc.messages.RunAsync@21fd224c) because the fencing token is null.

2018-11-15 15:09:53,182 ERROR org.apache.flink.runtime.entrypoint.ClusterEntrypoint         - Fatal error occurred in the cluster entrypoint.

java.lang.RuntimeException: org.apache.flink.util.FlinkException: Could not retrieve submitted JobGraph from state handle under /e13034f83a80072204facb2cec9ea6a3. This indicates that the retrieved state handle is broken. Try cleaning the state handle store.

        at org.apache.flink.util.ExceptionUtils.rethrow(ExceptionUtils.java:199)

        at org.apache.flink.util.function.FunctionUtils.lambda$uncheckedFunction$1(FunctionUtils.java:61)

        at java.util.concurrent.CompletableFuture.uniApply(CompletableFuture.java:602)

        at java.util.concurrent.CompletableFuture$UniApply.tryFire(CompletableFuture.java:577)

        at java.util.concurrent.CompletableFuture$Completion.run(CompletableFuture.java:442)

        at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:39)

        at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:415)

        at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)

        at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)

        at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)

        at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)

Caused by: org.apache.flink.util.FlinkException: Could not retrieve submitted JobGraph from state handle under /e13034f83a80072204facb2cec9ea6a3. This indicates that the retrieved state handle is broken. Try cleaning the state handle store.

        at org.apache.flink.runtime.jobmanager.ZooKeeperSubmittedJobGraphStore.recoverJobGraph(ZooKeeperSubmittedJobGraphStore.java:208)

        at org.apache.flink.runtime.dispatcher.Dispatcher.recoverJob(Dispatcher.java:692)

        at org.apache.flink.runtime.dispatcher.Dispatcher.recoverJobGraphs(Dispatcher.java:677)

        at org.apache.flink.runtime.dispatcher.Dispatcher.recoverJobs(Dispatcher.java:658)

        at org.apache.flink.runtime.dispatcher.Dispatcher.lambda$null$26(Dispatcher.java:817)

        at org.apache.flink.util.function.FunctionUtils.lambda$uncheckedFunction$1(FunctionUtils.java:59)

        ... 9 more

Caused by: java.io.FileNotFoundException: /checkpoint_repo/ha/submittedJobGraphdd865937d674 (No such file or directory)

        at java.io.FileInputStream.open0(Native Method)

        at java.io.FileInputStream.open(FileInputStream.java:195)

        at java.io.FileInputStream.<init>(FileInputStream.java:138)

        at org.apache.flink.core.fs.local.LocalDataInputStream.<init>(LocalDataInputStream.java:50)

        at org.apache.flink.core.fs.local.LocalFileSystem.open(LocalFileSystem.java:142)

        at org.apache.flink.runtime.state.filesystem.FileStateHandle.openInputStream(FileStateHandle.java:68)

        at org.apache.flink.runtime.state.RetrievableStreamStateHandle.openInputStream(RetrievableStreamStateHandle.java:64)

        at org.apache.flink.runtime.state.RetrievableStreamStateHandle.retrieveState(RetrievableStreamStateHandle.java:57)

        at org.apache.flink.runtime.jobmanager.ZooKeeperSubmittedJobGraphStore.recoverJobGraph(ZooKeeperSubmittedJobGraphStore.java:202)

        ... 14 more

2018-11-15 15:09:53,185 INFO  org.apache.flink.runtime.blob.TransientBlobCache              - Shutting down BLOB cache


thank you,

Olga