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Lost JobManager

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Chan, Regina
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Lost JobManager

Chan, Regina

Hi,

 

I’m running a single TM with the following params -yn 1 -ys 2 -yjm 36864 -ytm 24576 -yD akka.framesize=2097152000b

 

I keep repeatedly getting this error where I’m losing connection to the JobManager. It’s not clear why, it seems like the job is finishing up until the Datasink but the JobManager is lost before that completes. I’ve attached the jobmanager logs. Snippet further below.

 

org.apache.flink.client.program.ProgramInvocationException: The program execution failed: Couldn't retrieve the JobExecutionResult from the JobManager.

        at org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:478)

        at org.apache.flink.yarn.YarnClusterClient.submitJob(YarnClusterClient.java:205)

        at org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:442)

        at org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:429)

        at org.apache.flink.client.program.ContextEnvironment.execute(ContextEnvironment.java:62)

        at org.apache.flink.api.java.ExecutionEnvironment.execute(ExecutionEnvironment.java:926)

        at com.gs.ep.da.lake.refinerlib.flink.FlowDataBase.execute(FlowDataBase.java:40)

        at com.gs.ep.da.lake.refinerlib.flink.FlowData.runPartialDataFlow(FlowData.java:148)

        at com.gs.ep.da.lake.refinerlib.flink.FlowData.call(FlowData.java:56)

        at com.gs.ep.da.lake.refinerlib.flink.FlowData.call(FlowData.java:24)

        at java.util.concurrent.FutureTask.run(FutureTask.java:262)

        at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)

        at java.util.concurrent.FutureTask.run(FutureTask.java:262)

        at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)

        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)

        at java.lang.Thread.run(Thread.java:745)

Caused by: org.apache.flink.runtime.client.JobExecutionException: Couldn't retrieve the JobExecutionResult from the JobManager.

        at org.apache.flink.runtime.client.JobClient.awaitJobResult(JobClient.java:309)

        at org.apache.flink.runtime.client.JobClient.submitJobAndWait(JobClient.java:396)

        at org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:467)

        ... 15 more

Caused by: org.apache.flink.runtime.client.JobClientActorConnectionTimeoutException: Lost connection to the JobManager.

        at org.apache.flink.runtime.client.JobClientActor.handleMessage(JobClientActor.java:219)

        at org.apache.flink.runtime.akka.FlinkUntypedActor.handleLeaderSessionID(FlinkUntypedActor.java:101)

        at org.apache.flink.runtime.akka.FlinkUntypedActor.onReceive(FlinkUntypedActor.java:68)

        at akka.actor.UntypedActor$$anonfun$receive$1.applyOrElse(UntypedActor.scala:167)

        at akka.actor.Actor$class.aroundReceive(Actor.scala:467)

        at akka.actor.UntypedActor.aroundReceive(UntypedActor.scala:97)

        at akka.actor.ActorCell.receiveMessage(ActorCell.scala:516)

        at akka.actor.ActorCell.invoke(ActorCell.scala:487)

        at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:238)

        at akka.dispatch.Mailbox.run(Mailbox.scala:220)

        at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:397)

        at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)

        at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)

        at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)

        at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)

 

 

--------------

Jobmanager logs below:

 

506735 [flink-akka.actor.default-dispatcher-18] INFO org.apache.flink.runtime.executiongraph.ExecutionGraph - Map (Map at handleMilestoning(MergeTask.java:287)) (1/1) (b688af3e269a022daa48e1db7adf4b34) switched from RUNNING to FINISHED.

857174 [flink-akka.actor.default-dispatcher-19] INFO org.apache.flink.yarn.YarnJobManager - Stopping JobManager with final application status SUCCEEDED and diagnostics: Flink YARN Client requested shutdown

857175 [flink-akka.actor.default-dispatcher-21] INFO org.apache.flink.yarn.YarnFlinkResourceManager - Shutting down cluster with status SUCCEEDED : Flink YARN Client requested shutdown

857176 [flink-akka.actor.default-dispatcher-21] INFO org.apache.flink.yarn.YarnFlinkResourceManager - Unregistering application from the YARN Resource Manager

857180 [flink-akka.actor.default-dispatcher-21] INFO org.apache.hadoop.yarn.client.api.impl.AMRMClientImpl - Waiting for application to be successfully unregistered.

857282 [AMRM Callback Handler Thread] INFO org.apache.hadoop.yarn.client.api.async.impl.AMRMClientAsyncImpl - Interrupted while waiting for queue

java.lang.InterruptedException   at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.reportInterruptAfterWait(AbstractQueuedSynchronizer.java:2017)

            at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2052)

            at java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:442)

            at org.apache.hadoop.yarn.client.api.async.impl.AMRMClientAsyncImpl$CallbackHandlerThread.run(AMRMClientAsyncImpl.java:275)

857323 [flink-akka.actor.default-dispatcher-21] ERROR org.apache.hadoop.yarn.client.api.impl.NMClientImpl - Failed to stop Container container_1524967251050_56140_01_000003when stopping NMClientImpl

857323 [flink-akka.actor.default-dispatcher-21] INFO org.apache.hadoop.yarn.client.api.impl.ContainerManagementProtocolProxy - Closing proxy : d191291-019.dc.gs.com:45454

857326 [flink-akka.actor.default-dispatcher-19] INFO org.apache.flink.yarn.YarnJobManager - Deleting yarn application files under hdfs://d191291/user/delp/.flink/application_1524967251050_56140.

857326 [flink-akka.actor.default-dispatcher-27] ERROR org.apache.flink.yarn.YarnApplicationMasterRunner - Actor akka://flink/user/$b#256544107 terminated, stopping process...

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.http.authentication.kerberos.keytab;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.http.authentication.kerberos.principal;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.http.authentication.signature.secret.file;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.http.authentication.simple.anonymous.allowed;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.http.authentication.type;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.kerberos.kinit.command;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.rpc.protection;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.auth_to_local;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.authentication;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.authorization;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.base;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.bind.password.file;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.search.attr.group.name;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.search.attr.member;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.search.filter.group;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.url;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: ipc.client.fallback-to-simple-auth-allowed;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.block.access.token.enable;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.client.block.write.replace-datanode-on-failure.policy;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.client.read.shortcircuit;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.cluster.administrators;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.datanode.address;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.datanode.http.address;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.datanode.ipc.address;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.datanode.kerberos.principal;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.datanode.keytab.file;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.domain.socket.path;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.hosts;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.hosts.exclude;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.namenode.kerberos.internal.spnego.principal;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.namenode.kerberos.principal;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.namenode.keytab.file;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.permissions.superusergroup;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.secondary.namenode.kerberos.internal.spnego.principal;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.secondary.namenode.kerberos.principal;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.secondary.namenode.keytab.file;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.web.authentication.kerberos.keytab;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.web.authentication.kerberos.principal;  Ignoring.

857349 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.hdfs.BlockReaderLocal - The short-circuit local reads feature cannot be used because libhadoop cannot be loaded.

857356 [flink-akka.actor.default-dispatcher-19] INFO org.apache.flink.yarn.YarnJobManager - Stopping JobManager akka.tcp://[hidden email]:33812/user/jobmanager.

857357 [flink-akka.actor.default-dispatcher-21] INFO org.apache.flink.runtime.executiongraph.ExecutionGraph - Job Flink Java Job at Tue May 01 17:58:37 EDT 2018 (1673e636d863ff81916b47c4296ed026) switched from state RUNNING to SUSPENDED.

java.lang.Exception: The JobManager is shutting down.

            at org.apache.flink.runtime.jobmanager.JobManager.postStop(JobManager.scala:240)

            at akka.actor.Actor$class.aroundPostStop(Actor.scala:477)

            at org.apache.flink.runtime.jobmanager.JobManager.aroundPostStop(JobManager.scala:125)

            at akka.actor.dungeon.FaultHandling$class.akka$actor$dungeon$FaultHandling$$finishTerminate(FaultHandling.scala:210)

            at akka.actor.dungeon.FaultHandling$class.terminate(FaultHandling.scala:172)

            at akka.actor.ActorCell.terminate(ActorCell.scala:369)

            at akka.actor.ActorCell.invokeAll$1(ActorCell.scala:462)

            at akka.actor.ActorCell.systemInvoke(ActorCell.scala:478)

            at akka.dispatch.Mailbox.processAllSystemMessages(Mailbox.scala:263)

            at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:241)

            at akka.dispatch.Mailbox.run(Mailbox.scala:220)

            at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:397)

            at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)

            at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)

            at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)

            at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)

 

Regina Chan

Goldman Sachs – Enterprise Platforms, Data Architecture

30 Hudson Street, 37th floor | Jersey City, NY 07302 (  (212) 902-5697

 


jobmanager.log (5M) Download Attachment
Fabian Hueske-2
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Re: Lost JobManager

Fabian Hueske-2
Hi Regina,

I see from the logs that you are using the DataSet API.
Are you trying to fetch a large result to your client using the collect() method?

Best, Fabian

2018-05-02 0:38 GMT+02:00 Chan, Regina <[hidden email]>:

Hi,

 

I’m running a single TM with the following params -yn 1 -ys 2 -yjm 36864 -ytm 24576 -yD akka.framesize=2097152000b

 

I keep repeatedly getting this error where I’m losing connection to the JobManager. It’s not clear why, it seems like the job is finishing up until the Datasink but the JobManager is lost before that completes. I’ve attached the jobmanager logs. Snippet further below.

 

org.apache.flink.client.program.ProgramInvocationException: The program execution failed: Couldn't retrieve the JobExecutionResult from the JobManager.

        at org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:478)

        at org.apache.flink.yarn.YarnClusterClient.submitJob(YarnClusterClient.java:205)

        at org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:442)

        at org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:429)

        at org.apache.flink.client.program.ContextEnvironment.execute(ContextEnvironment.java:62)

        at org.apache.flink.api.java.ExecutionEnvironment.execute(ExecutionEnvironment.java:926)

        at com.gs.ep.da.lake.refinerlib.flink.FlowDataBase.execute(FlowDataBase.java:40)

        at com.gs.ep.da.lake.refinerlib.flink.FlowData.runPartialDataFlow(FlowData.java:148)

        at com.gs.ep.da.lake.refinerlib.flink.FlowData.call(FlowData.java:56)

        at com.gs.ep.da.lake.refinerlib.flink.FlowData.call(FlowData.java:24)

        at java.util.concurrent.FutureTask.run(FutureTask.java:262)

        at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)

        at java.util.concurrent.FutureTask.run(FutureTask.java:262)

        at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)

        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)

        at java.lang.Thread.run(Thread.java:745)

Caused by: org.apache.flink.runtime.client.JobExecutionException: Couldn't retrieve the JobExecutionResult from the JobManager.

        at org.apache.flink.runtime.client.JobClient.awaitJobResult(JobClient.java:309)

        at org.apache.flink.runtime.client.JobClient.submitJobAndWait(JobClient.java:396)

        at org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:467)

        ... 15 more

Caused by: org.apache.flink.runtime.client.JobClientActorConnectionTimeoutException: Lost connection to the JobManager.

        at org.apache.flink.runtime.client.JobClientActor.handleMessage(JobClientActor.java:219)

        at org.apache.flink.runtime.akka.FlinkUntypedActor.handleLeaderSessionID(FlinkUntypedActor.java:101)

        at org.apache.flink.runtime.akka.FlinkUntypedActor.onReceive(FlinkUntypedActor.java:68)

        at akka.actor.UntypedActor$$anonfun$receive$1.applyOrElse(UntypedActor.scala:167)

        at akka.actor.Actor$class.aroundReceive(Actor.scala:467)

        at akka.actor.UntypedActor.aroundReceive(UntypedActor.scala:97)

        at akka.actor.ActorCell.receiveMessage(ActorCell.scala:516)

        at akka.actor.ActorCell.invoke(ActorCell.scala:487)

        at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:238)

        at akka.dispatch.Mailbox.run(Mailbox.scala:220)

        at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:397)

        at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)

        at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)

        at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)

        at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)

 

 

--------------

Jobmanager logs below:

 

506735 [flink-akka.actor.default-dispatcher-18] INFO org.apache.flink.runtime.executiongraph.ExecutionGraph - Map (Map at handleMilestoning(MergeTask.java:287)) (1/1) (b688af3e269a022daa48e1db7adf4b34) switched from RUNNING to FINISHED.

857174 [flink-akka.actor.default-dispatcher-19] INFO org.apache.flink.yarn.YarnJobManager - Stopping JobManager with final application status SUCCEEDED and diagnostics: Flink YARN Client requested shutdown

857175 [flink-akka.actor.default-dispatcher-21] INFO org.apache.flink.yarn.YarnFlinkResourceManager - Shutting down cluster with status SUCCEEDED : Flink YARN Client requested shutdown

857176 [flink-akka.actor.default-dispatcher-21] INFO org.apache.flink.yarn.YarnFlinkResourceManager - Unregistering application from the YARN Resource Manager

857180 [flink-akka.actor.default-dispatcher-21] INFO org.apache.hadoop.yarn.client.api.impl.AMRMClientImpl - Waiting for application to be successfully unregistered.

857282 [AMRM Callback Handler Thread] INFO org.apache.hadoop.yarn.client.api.async.impl.AMRMClientAsyncImpl - Interrupted while waiting for queue

java.lang.InterruptedException   at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.reportInterruptAfterWait(AbstractQueuedSynchronizer.java:2017)

            at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2052)

            at java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:442)

            at org.apache.hadoop.yarn.client.api.async.impl.AMRMClientAsyncImpl$CallbackHandlerThread.run(AMRMClientAsyncImpl.java:275)

857323 [flink-akka.actor.default-dispatcher-21] ERROR org.apache.hadoop.yarn.client.api.impl.NMClientImpl - Failed to stop Container container_1524967251050_56140_01_000003when stopping NMClientImpl

857323 [flink-akka.actor.default-dispatcher-21] INFO org.apache.hadoop.yarn.client.api.impl.ContainerManagementProtocolProxy - Closing proxy : d191291-019.dc.gs.com:45454

857326 [flink-akka.actor.default-dispatcher-19] INFO org.apache.flink.yarn.YarnJobManager - Deleting yarn application files under hdfs://d191291/user/delp/.flink/application_1524967251050_56140.

857326 [flink-akka.actor.default-dispatcher-27] ERROR org.apache.flink.yarn.YarnApplicationMasterRunner - Actor akka://flink/user/$b#256544107 terminated, stopping process...

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.http.authentication.kerberos.keytab;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.http.authentication.kerberos.principal;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.http.authentication.signature.secret.file;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.http.authentication.simple.anonymous.allowed;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.http.authentication.type;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.kerberos.kinit.command;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.rpc.protection;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.auth_to_local;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.authentication;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.authorization;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.base;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.bind.password.file;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.search.attr.group.name;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.search.attr.member;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.search.filter.group;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.url;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: ipc.client.fallback-to-simple-auth-allowed;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.block.access.token.enable;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.client.block.write.replace-datanode-on-failure.policy;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.client.read.shortcircuit;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.cluster.administrators;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.datanode.address;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.datanode.http.address;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.datanode.ipc.address;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.datanode.kerberos.principal;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.datanode.keytab.file;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.domain.socket.path;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.hosts;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.hosts.exclude;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.namenode.kerberos.internal.spnego.principal;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.namenode.kerberos.principal;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.namenode.keytab.file;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.permissions.superusergroup;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.secondary.namenode.kerberos.internal.spnego.principal;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.secondary.namenode.kerberos.principal;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.secondary.namenode.keytab.file;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.web.authentication.kerberos.keytab;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.web.authentication.kerberos.principal;  Ignoring.

857349 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.hdfs.BlockReaderLocal - The short-circuit local reads feature cannot be used because libhadoop cannot be loaded.

857356 [flink-akka.actor.default-dispatcher-19] INFO org.apache.flink.yarn.YarnJobManager - Stopping JobManager akka.tcp://flink@d191291-053.dc.gs.com:33812/user/jobmanager.

857357 [flink-akka.actor.default-dispatcher-21] INFO org.apache.flink.runtime.executiongraph.ExecutionGraph - Job Flink Java Job at Tue May 01 17:58:37 EDT 2018 (1673e636d863ff81916b47c4296ed026) switched from state RUNNING to SUSPENDED.

java.lang.Exception: The JobManager is shutting down.

            at org.apache.flink.runtime.jobmanager.JobManager.postStop(JobManager.scala:240)

            at akka.actor.Actor$class.aroundPostStop(Actor.scala:477)

            at org.apache.flink.runtime.jobmanager.JobManager.aroundPostStop(JobManager.scala:125)

            at akka.actor.dungeon.FaultHandling$class.akka$actor$dungeon$FaultHandling$$finishTerminate(FaultHandling.scala:210)

            at akka.actor.dungeon.FaultHandling$class.terminate(FaultHandling.scala:172)

            at akka.actor.ActorCell.terminate(ActorCell.scala:369)

            at akka.actor.ActorCell.invokeAll$1(ActorCell.scala:462)

            at akka.actor.ActorCell.systemInvoke(ActorCell.scala:478)

            at akka.dispatch.Mailbox.processAllSystemMessages(Mailbox.scala:263)

            at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:241)

            at akka.dispatch.Mailbox.run(Mailbox.scala:220)

            at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:397)

            at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)

            at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)

            at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)

            at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)

 

Regina Chan

Goldman Sachs – Enterprise Platforms, Data Architecture

30 Hudson Street, 37th floor | Jersey City, NY 07302 (  (212) 902-5697

 
Chan, Regina
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RE: Lost JobManager

Chan, Regina

There’s no collect() explicitly from me. It has a cogroup operator before writing to DataSink.

 

 

From: Fabian Hueske [mailto:[hidden email]]
Sent: Monday, May 07, 2018 6:31 AM
To: Chan, Regina [Tech]
Cc: [hidden email]; Newport, Billy [Tech]
Subject: Re: Lost JobManager

 

Hi Regina,

I see from the logs that you are using the DataSet API.

Are you trying to fetch a large result to your client using the collect() method?

Best, Fabian

 

2018-05-02 0:38 GMT+02:00 Chan, Regina <[hidden email]>:

Hi,

 

I’m running a single TM with the following params -yn 1 -ys 2 -yjm 36864 -ytm 24576 -yD akka.framesize=2097152000b

 

I keep repeatedly getting this error where I’m losing connection to the JobManager. It’s not clear why, it seems like the job is finishing up until the Datasink but the JobManager is lost before that completes. I’ve attached the jobmanager logs. Snippet further below.

 

org.apache.flink.client.program.ProgramInvocationException: The program execution failed: Couldn't retrieve the JobExecutionResult from the JobManager.

        at org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:478)

        at org.apache.flink.yarn.YarnClusterClient.submitJob(YarnClusterClient.java:205)

        at org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:442)

        at org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:429)

        at org.apache.flink.client.program.ContextEnvironment.execute(ContextEnvironment.java:62)

        at org.apache.flink.api.java.ExecutionEnvironment.execute(ExecutionEnvironment.java:926)

        at com.gs.ep.da.lake.refinerlib.flink.FlowDataBase.execute(FlowDataBase.java:40)

        at com.gs.ep.da.lake.refinerlib.flink.FlowData.runPartialDataFlow(FlowData.java:148)

        at com.gs.ep.da.lake.refinerlib.flink.FlowData.call(FlowData.java:56)

        at com.gs.ep.da.lake.refinerlib.flink.FlowData.call(FlowData.java:24)

        at java.util.concurrent.FutureTask.run(FutureTask.java:262)

        at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)

        at java.util.concurrent.FutureTask.run(FutureTask.java:262)

        at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)

        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)

        at java.lang.Thread.run(Thread.java:745)

Caused by: org.apache.flink.runtime.client.JobExecutionException: Couldn't retrieve the JobExecutionResult from the JobManager.

        at org.apache.flink.runtime.client.JobClient.awaitJobResult(JobClient.java:309)

        at org.apache.flink.runtime.client.JobClient.submitJobAndWait(JobClient.java:396)

        at org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:467)

        ... 15 more

Caused by: org.apache.flink.runtime.client.JobClientActorConnectionTimeoutException: Lost connection to the JobManager.

        at org.apache.flink.runtime.client.JobClientActor.handleMessage(JobClientActor.java:219)

        at org.apache.flink.runtime.akka.FlinkUntypedActor.handleLeaderSessionID(FlinkUntypedActor.java:101)

        at org.apache.flink.runtime.akka.FlinkUntypedActor.onReceive(FlinkUntypedActor.java:68)

        at akka.actor.UntypedActor$$anonfun$receive$1.applyOrElse(UntypedActor.scala:167)

        at akka.actor.Actor$class.aroundReceive(Actor.scala:467)

        at akka.actor.UntypedActor.aroundReceive(UntypedActor.scala:97)

        at akka.actor.ActorCell.receiveMessage(ActorCell.scala:516)

        at akka.actor.ActorCell.invoke(ActorCell.scala:487)

        at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:238)

        at akka.dispatch.Mailbox.run(Mailbox.scala:220)

        at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:397)

        at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)

        at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)

        at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)

        at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)

 

 

--------------

Jobmanager logs below:

 

506735 [flink-akka.actor.default-dispatcher-18] INFO org.apache.flink.runtime.executiongraph.ExecutionGraph - Map (Map at handleMilestoning(MergeTask.java:287)) (1/1) (b688af3e269a022daa48e1db7adf4b34) switched from RUNNING to FINISHED.

857174 [flink-akka.actor.default-dispatcher-19] INFO org.apache.flink.yarn.YarnJobManager - Stopping JobManager with final application status SUCCEEDED and diagnostics: Flink YARN Client requested shutdown

857175 [flink-akka.actor.default-dispatcher-21] INFO org.apache.flink.yarn.YarnFlinkResourceManager - Shutting down cluster with status SUCCEEDED : Flink YARN Client requested shutdown

857176 [flink-akka.actor.default-dispatcher-21] INFO org.apache.flink.yarn.YarnFlinkResourceManager - Unregistering application from the YARN Resource Manager

857180 [flink-akka.actor.default-dispatcher-21] INFO org.apache.hadoop.yarn.client.api.impl.AMRMClientImpl - Waiting for application to be successfully unregistered.

857282 [AMRM Callback Handler Thread] INFO org.apache.hadoop.yarn.client.api.async.impl.AMRMClientAsyncImpl - Interrupted while waiting for queue

java.lang.InterruptedException   at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.reportInterruptAfterWait(AbstractQueuedSynchronizer.java:2017)

            at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2052)

            at java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:442)

            at org.apache.hadoop.yarn.client.api.async.impl.AMRMClientAsyncImpl$CallbackHandlerThread.run(AMRMClientAsyncImpl.java:275)

857323 [flink-akka.actor.default-dispatcher-21] ERROR org.apache.hadoop.yarn.client.api.impl.NMClientImpl - Failed to stop Container container_1524967251050_56140_01_000003when stopping NMClientImpl

857323 [flink-akka.actor.default-dispatcher-21] INFO org.apache.hadoop.yarn.client.api.impl.ContainerManagementProtocolProxy - Closing proxy : d191291-019.dc.gs.com:45454

857326 [flink-akka.actor.default-dispatcher-19] INFO org.apache.flink.yarn.YarnJobManager - Deleting yarn application files under hdfs://d191291/user/delp/.flink/application_1524967251050_56140.

857326 [flink-akka.actor.default-dispatcher-27] ERROR org.apache.flink.yarn.YarnApplicationMasterRunner - Actor akka://flink/user/$b#256544107 terminated, stopping process...

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.http.authentication.kerberos.keytab;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.http.authentication.kerberos.principal;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.http.authentication.signature.secret.file;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.http.authentication.simple.anonymous.allowed;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.http.authentication.type;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.kerberos.kinit.command;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.rpc.protection;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.auth_to_local;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.authentication;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.authorization;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.base;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.bind.password.file;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.search.attr.group.name;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.search.attr.member;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.search.filter.group;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.url;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: ipc.client.fallback-to-simple-auth-allowed;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.block.access.token.enable;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.client.block.write.replace-datanode-on-failure.policy;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.client.read.shortcircuit;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.cluster.administrators;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.datanode.address;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.datanode.http.address;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.datanode.ipc.address;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.datanode.kerberos.principal;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.datanode.keytab.file;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.domain.socket.path;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.hosts;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.hosts.exclude;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.namenode.kerberos.internal.spnego.principal;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.namenode.kerberos.principal;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.namenode.keytab.file;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.permissions.superusergroup;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.secondary.namenode.kerberos.internal.spnego.principal;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.secondary.namenode.kerberos.principal;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.secondary.namenode.keytab.file;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.web.authentication.kerberos.keytab;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.web.authentication.kerberos.principal;  Ignoring.

857349 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.hdfs.BlockReaderLocal - The short-circuit local reads feature cannot be used because libhadoop cannot be loaded.

857356 [flink-akka.actor.default-dispatcher-19] INFO org.apache.flink.yarn.YarnJobManager - Stopping JobManager akka.tcp://flink@...:33812/user/jobmanager.

857357 [flink-akka.actor.default-dispatcher-21] INFO org.apache.flink.runtime.executiongraph.ExecutionGraph - Job Flink Java Job at Tue May 01 17:58:37 EDT 2018 (1673e636d863ff81916b47c4296ed026) switched from state RUNNING to SUSPENDED.

java.lang.Exception: The JobManager is shutting down.

            at org.apache.flink.runtime.jobmanager.JobManager.postStop(JobManager.scala:240)

            at akka.actor.Actor$class.aroundPostStop(Actor.scala:477)

            at org.apache.flink.runtime.jobmanager.JobManager.aroundPostStop(JobManager.scala:125)

            at akka.actor.dungeon.FaultHandling$class.akka$actor$dungeon$FaultHandling$$finishTerminate(FaultHandling.scala:210)

            at akka.actor.dungeon.FaultHandling$class.terminate(FaultHandling.scala:172)

            at akka.actor.ActorCell.terminate(ActorCell.scala:369)

            at akka.actor.ActorCell.invokeAll$1(ActorCell.scala:462)

            at akka.actor.ActorCell.systemInvoke(ActorCell.scala:478)

            at akka.dispatch.Mailbox.processAllSystemMessages(Mailbox.scala:263)

            at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:241)

            at akka.dispatch.Mailbox.run(Mailbox.scala:220)

            at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:397)

            at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)

            at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)

            at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)

            at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)

 

Regina Chan

Goldman Sachs – Enterprise Platforms, Data Architecture

30 Hudson Street, 37th floor | Jersey City, NY 07302 (  (212) 902-5697

 

 
Fabian Hueske-2
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Re: Lost JobManager

Fabian Hueske-2
Hi,

I noticed that you configured the Akka framesize to 2GB (the default being 10MB).
This appears like quite a lot to me and might be causing problems since the exceptions indicate an Akka timeout issue.
Did configure the framesize for a particular reason that high?

It seems that you are running a custom build of Flink. Which version did you base your build on?

Best, Fabian

2018-05-08 17:41 GMT+02:00 Chan, Regina <[hidden email]>:

There’s no collect() explicitly from me. It has a cogroup operator before writing to DataSink.

 

 

From: Fabian Hueske [mailto:[hidden email]]
Sent: Monday, May 07, 2018 6:31 AM
To: Chan, Regina [Tech]
Cc: [hidden email]; Newport, Billy [Tech]
Subject: Re: Lost JobManager

 

Hi Regina,

I see from the logs that you are using the DataSet API.

Are you trying to fetch a large result to your client using the collect() method?

Best, Fabian

 

2018-05-02 0:38 GMT+02:00 Chan, Regina <[hidden email]>:

Hi,

 

I’m running a single TM with the following params -yn 1 -ys 2 -yjm 36864 -ytm 24576 -yD akka.framesize=2097152000b

 

I keep repeatedly getting this error where I’m losing connection to the JobManager. It’s not clear why, it seems like the job is finishing up until the Datasink but the JobManager is lost before that completes. I’ve attached the jobmanager logs. Snippet further below.

 

org.apache.flink.client.program.ProgramInvocationException: The program execution failed: Couldn't retrieve the JobExecutionResult from the JobManager.

        at org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:478)

        at org.apache.flink.yarn.YarnClusterClient.submitJob(YarnClusterClient.java:205)

        at org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:442)

        at org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:429)

        at org.apache.flink.client.program.ContextEnvironment.execute(ContextEnvironment.java:62)

        at org.apache.flink.api.java.ExecutionEnvironment.execute(ExecutionEnvironment.java:926)

        at com.gs.ep.da.lake.refinerlib.flink.FlowDataBase.execute(FlowDataBase.java:40)

        at com.gs.ep.da.lake.refinerlib.flink.FlowData.runPartialDataFlow(FlowData.java:148)

        at com.gs.ep.da.lake.refinerlib.flink.FlowData.call(FlowData.java:56)

        at com.gs.ep.da.lake.refinerlib.flink.FlowData.call(FlowData.java:24)

        at java.util.concurrent.FutureTask.run(FutureTask.java:262)

        at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)

        at java.util.concurrent.FutureTask.run(FutureTask.java:262)

        at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)

        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)

        at java.lang.Thread.run(Thread.java:745)

Caused by: org.apache.flink.runtime.client.JobExecutionException: Couldn't retrieve the JobExecutionResult from the JobManager.

        at org.apache.flink.runtime.client.JobClient.awaitJobResult(JobClient.java:309)

        at org.apache.flink.runtime.client.JobClient.submitJobAndWait(JobClient.java:396)

        at org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:467)

        ... 15 more

Caused by: org.apache.flink.runtime.client.JobClientActorConnectionTimeoutException: Lost connection to the JobManager.

        at org.apache.flink.runtime.client.JobClientActor.handleMessage(JobClientActor.java:219)

        at org.apache.flink.runtime.akka.FlinkUntypedActor.handleLeaderSessionID(FlinkUntypedActor.java:101)

        at org.apache.flink.runtime.akka.FlinkUntypedActor.onReceive(FlinkUntypedActor.java:68)

        at akka.actor.UntypedActor$$anonfun$receive$1.applyOrElse(UntypedActor.scala:167)

        at akka.actor.Actor$class.aroundReceive(Actor.scala:467)

        at akka.actor.UntypedActor.aroundReceive(UntypedActor.scala:97)

        at akka.actor.ActorCell.receiveMessage(ActorCell.scala:516)

        at akka.actor.ActorCell.invoke(ActorCell.scala:487)

        at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:238)

        at akka.dispatch.Mailbox.run(Mailbox.scala:220)

        at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:397)

        at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)

        at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)

        at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)

        at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)

 

 

--------------

Jobmanager logs below:

 

506735 [flink-akka.actor.default-dispatcher-18] INFO org.apache.flink.runtime.executiongraph.ExecutionGraph - Map (Map at handleMilestoning(MergeTask.java:287)) (1/1) (b688af3e269a022daa48e1db7adf4b34) switched from RUNNING to FINISHED.

857174 [flink-akka.actor.default-dispatcher-19] INFO org.apache.flink.yarn.YarnJobManager - Stopping JobManager with final application status SUCCEEDED and diagnostics: Flink YARN Client requested shutdown

857175 [flink-akka.actor.default-dispatcher-21] INFO org.apache.flink.yarn.YarnFlinkResourceManager - Shutting down cluster with status SUCCEEDED : Flink YARN Client requested shutdown

857176 [flink-akka.actor.default-dispatcher-21] INFO org.apache.flink.yarn.YarnFlinkResourceManager - Unregistering application from the YARN Resource Manager

857180 [flink-akka.actor.default-dispatcher-21] INFO org.apache.hadoop.yarn.client.api.impl.AMRMClientImpl - Waiting for application to be successfully unregistered.

857282 [AMRM Callback Handler Thread] INFO org.apache.hadoop.yarn.client.api.async.impl.AMRMClientAsyncImpl - Interrupted while waiting for queue

java.lang.InterruptedException   at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.reportInterruptAfterWait(AbstractQueuedSynchronizer.java:2017)

            at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2052)

            at java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:442)

            at org.apache.hadoop.yarn.client.api.async.impl.AMRMClientAsyncImpl$CallbackHandlerThread.run(AMRMClientAsyncImpl.java:275)

857323 [flink-akka.actor.default-dispatcher-21] ERROR org.apache.hadoop.yarn.client.api.impl.NMClientImpl - Failed to stop Container container_1524967251050_56140_01_000003when stopping NMClientImpl

857323 [flink-akka.actor.default-dispatcher-21] INFO org.apache.hadoop.yarn.client.api.impl.ContainerManagementProtocolProxy - Closing proxy : d191291-019.dc.gs.com:45454

857326 [flink-akka.actor.default-dispatcher-19] INFO org.apache.flink.yarn.YarnJobManager - Deleting yarn application files under hdfs://d191291/user/delp/.flink/application_1524967251050_56140.

857326 [flink-akka.actor.default-dispatcher-27] ERROR org.apache.flink.yarn.YarnApplicationMasterRunner - Actor akka://flink/user/$b#256544107 terminated, stopping process...

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.http.authentication.kerberos.keytab;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.http.authentication.kerberos.principal;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.http.authentication.signature.secret.file;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.http.authentication.simple.anonymous.allowed;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.http.authentication.type;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.kerberos.kinit.command;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.rpc.protection;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.auth_to_local;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.authentication;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.authorization;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.base;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.bind.password.file;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.search.attr.group.name;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.search.attr.member;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.search.filter.group;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.url;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: ipc.client.fallback-to-simple-auth-allowed;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.block.access.token.enable;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.client.block.write.replace-datanode-on-failure.policy;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.client.read.shortcircuit;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.cluster.administrators;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.datanode.address;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.datanode.http.address;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.datanode.ipc.address;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.datanode.kerberos.principal;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.datanode.keytab.file;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.domain.socket.path;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.hosts;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.hosts.exclude;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.namenode.kerberos.internal.spnego.principal;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.namenode.kerberos.principal;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.namenode.keytab.file;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.permissions.superusergroup;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.secondary.namenode.kerberos.internal.spnego.principal;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.secondary.namenode.kerberos.principal;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.secondary.namenode.keytab.file;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.web.authentication.kerberos.keytab;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.web.authentication.kerberos.principal;  Ignoring.

857349 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.hdfs.BlockReaderLocal - The short-circuit local reads feature cannot be used because libhadoop cannot be loaded.

857356 [flink-akka.actor.default-dispatcher-19] INFO org.apache.flink.yarn.YarnJobManager - Stopping JobManager akka.tcp://flink@d191291-053.dc.gs.com:33812/user/jobmanager.

857357 [flink-akka.actor.default-dispatcher-21] INFO org.apache.flink.runtime.executiongraph.ExecutionGraph - Job Flink Java Job at Tue May 01 17:58:37 EDT 2018 (1673e636d863ff81916b47c4296ed026) switched from state RUNNING to SUSPENDED.

java.lang.Exception: The JobManager is shutting down.

            at org.apache.flink.runtime.jobmanager.JobManager.postStop(JobManager.scala:240)

            at akka.actor.Actor$class.aroundPostStop(Actor.scala:477)

            at org.apache.flink.runtime.jobmanager.JobManager.aroundPostStop(JobManager.scala:125)

            at akka.actor.dungeon.FaultHandling$class.akka$actor$dungeon$FaultHandling$$finishTerminate(FaultHandling.scala:210)

            at akka.actor.dungeon.FaultHandling$class.terminate(FaultHandling.scala:172)

            at akka.actor.ActorCell.terminate(ActorCell.scala:369)

            at akka.actor.ActorCell.invokeAll$1(ActorCell.scala:462)

            at akka.actor.ActorCell.systemInvoke(ActorCell.scala:478)

            at akka.dispatch.Mailbox.processAllSystemMessages(Mailbox.scala:263)

            at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:241)

            at akka.dispatch.Mailbox.run(Mailbox.scala:220)

            at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:397)

            at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)

            at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)

            at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)

            at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)

 

Regina Chan

Goldman Sachs – Enterprise Platforms, Data Architecture

30 Hudson Street, 37th floor | Jersey City, NY 07302 (  (212) 902-5697

 

 
Stephan Ewen
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Re: Lost JobManager

Stephan Ewen
Hi!

This somehow looks like the YARN shutdown call overtakes the call that marks the Job as successful. That should not be the case.

Looking at the logs, you are running a Java 7 installation, so I assume this must be some Flink 1.3.x based build. Can you let us know which version this is based on exactly?

Best,
Stephan



On Tue, May 8, 2018 at 9:20 PM, Fabian Hueske <[hidden email]> wrote:
Hi,

I noticed that you configured the Akka framesize to 2GB (the default being 10MB).
This appears like quite a lot to me and might be causing problems since the exceptions indicate an Akka timeout issue.
Did configure the framesize for a particular reason that high?

It seems that you are running a custom build of Flink. Which version did you base your build on?

Best, Fabian

2018-05-08 17:41 GMT+02:00 Chan, Regina <[hidden email]>:

There’s no collect() explicitly from me. It has a cogroup operator before writing to DataSink.

 

 

From: Fabian Hueske [mailto:[hidden email]]
Sent: Monday, May 07, 2018 6:31 AM
To: Chan, Regina [Tech]
Cc: [hidden email]; Newport, Billy [Tech]
Subject: Re: Lost JobManager

 

Hi Regina,

I see from the logs that you are using the DataSet API.

Are you trying to fetch a large result to your client using the collect() method?

Best, Fabian

 

2018-05-02 0:38 GMT+02:00 Chan, Regina <[hidden email]>:

Hi,

 

I’m running a single TM with the following params -yn 1 -ys 2 -yjm 36864 -ytm 24576 -yD akka.framesize=2097152000b

 

I keep repeatedly getting this error where I’m losing connection to the JobManager. It’s not clear why, it seems like the job is finishing up until the Datasink but the JobManager is lost before that completes. I’ve attached the jobmanager logs. Snippet further below.

 

org.apache.flink.client.program.ProgramInvocationException: The program execution failed: Couldn't retrieve the JobExecutionResult from the JobManager.

        at org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:478)

        at org.apache.flink.yarn.YarnClusterClient.submitJob(YarnClusterClient.java:205)

        at org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:442)

        at org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:429)

        at org.apache.flink.client.program.ContextEnvironment.execute(ContextEnvironment.java:62)

        at org.apache.flink.api.java.ExecutionEnvironment.execute(ExecutionEnvironment.java:926)

        at com.gs.ep.da.lake.refinerlib.flink.FlowDataBase.execute(FlowDataBase.java:40)

        at com.gs.ep.da.lake.refinerlib.flink.FlowData.runPartialDataFlow(FlowData.java:148)

        at com.gs.ep.da.lake.refinerlib.flink.FlowData.call(FlowData.java:56)

        at com.gs.ep.da.lake.refinerlib.flink.FlowData.call(FlowData.java:24)

        at java.util.concurrent.FutureTask.run(FutureTask.java:262)

        at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)

        at java.util.concurrent.FutureTask.run(FutureTask.java:262)

        at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)

        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)

        at java.lang.Thread.run(Thread.java:745)

Caused by: org.apache.flink.runtime.client.JobExecutionException: Couldn't retrieve the JobExecutionResult from the JobManager.

        at org.apache.flink.runtime.client.JobClient.awaitJobResult(JobClient.java:309)

        at org.apache.flink.runtime.client.JobClient.submitJobAndWait(JobClient.java:396)

        at org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:467)

        ... 15 more

Caused by: org.apache.flink.runtime.client.JobClientActorConnectionTimeoutException: Lost connection to the JobManager.

        at org.apache.flink.runtime.client.JobClientActor.handleMessage(JobClientActor.java:219)

        at org.apache.flink.runtime.akka.FlinkUntypedActor.handleLeaderSessionID(FlinkUntypedActor.java:101)

        at org.apache.flink.runtime.akka.FlinkUntypedActor.onReceive(FlinkUntypedActor.java:68)

        at akka.actor.UntypedActor$$anonfun$receive$1.applyOrElse(UntypedActor.scala:167)

        at akka.actor.Actor$class.aroundReceive(Actor.scala:467)

        at akka.actor.UntypedActor.aroundReceive(UntypedActor.scala:97)

        at akka.actor.ActorCell.receiveMessage(ActorCell.scala:516)

        at akka.actor.ActorCell.invoke(ActorCell.scala:487)

        at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:238)

        at akka.dispatch.Mailbox.run(Mailbox.scala:220)

        at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:397)

        at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)

        at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)

        at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)

        at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)

 

 

--------------

Jobmanager logs below:

 

506735 [flink-akka.actor.default-dispatcher-18] INFO org.apache.flink.runtime.executiongraph.ExecutionGraph - Map (Map at handleMilestoning(MergeTask.java:287)) (1/1) (b688af3e269a022daa48e1db7adf4b34) switched from RUNNING to FINISHED.

857174 [flink-akka.actor.default-dispatcher-19] INFO org.apache.flink.yarn.YarnJobManager - Stopping JobManager with final application status SUCCEEDED and diagnostics: Flink YARN Client requested shutdown

857175 [flink-akka.actor.default-dispatcher-21] INFO org.apache.flink.yarn.YarnFlinkResourceManager - Shutting down cluster with status SUCCEEDED : Flink YARN Client requested shutdown

857176 [flink-akka.actor.default-dispatcher-21] INFO org.apache.flink.yarn.YarnFlinkResourceManager - Unregistering application from the YARN Resource Manager

857180 [flink-akka.actor.default-dispatcher-21] INFO org.apache.hadoop.yarn.client.api.impl.AMRMClientImpl - Waiting for application to be successfully unregistered.

857282 [AMRM Callback Handler Thread] INFO org.apache.hadoop.yarn.client.api.async.impl.AMRMClientAsyncImpl - Interrupted while waiting for queue

java.lang.InterruptedException   at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.reportInterruptAfterWait(AbstractQueuedSynchronizer.java:2017)

            at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2052)

            at java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:442)

            at org.apache.hadoop.yarn.client.api.async.impl.AMRMClientAsyncImpl$CallbackHandlerThread.run(AMRMClientAsyncImpl.java:275)

857323 [flink-akka.actor.default-dispatcher-21] ERROR org.apache.hadoop.yarn.client.api.impl.NMClientImpl - Failed to stop Container container_1524967251050_56140_01_000003when stopping NMClientImpl

857323 [flink-akka.actor.default-dispatcher-21] INFO org.apache.hadoop.yarn.client.api.impl.ContainerManagementProtocolProxy - Closing proxy : d191291-019.dc.gs.com:45454

857326 [flink-akka.actor.default-dispatcher-19] INFO org.apache.flink.yarn.YarnJobManager - Deleting yarn application files under hdfs://d191291/user/delp/.flink/application_1524967251050_56140.

857326 [flink-akka.actor.default-dispatcher-27] ERROR org.apache.flink.yarn.YarnApplicationMasterRunner - Actor akka://flink/user/$b#256544107 terminated, stopping process...

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.http.authentication.kerberos.keytab;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.http.authentication.kerberos.principal;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.http.authentication.signature.secret.file;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.http.authentication.simple.anonymous.allowed;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.http.authentication.type;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.kerberos.kinit.command;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.rpc.protection;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.auth_to_local;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.authentication;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.authorization;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.base;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.bind.password.file;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.search.attr.group.name;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.search.attr.member;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.search.filter.group;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.url;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: ipc.client.fallback-to-simple-auth-allowed;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.block.access.token.enable;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.client.block.write.replace-datanode-on-failure.policy;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.client.read.shortcircuit;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.cluster.administrators;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.datanode.address;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.datanode.http.address;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.datanode.ipc.address;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.datanode.kerberos.principal;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.datanode.keytab.file;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.domain.socket.path;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.hosts;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.hosts.exclude;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.namenode.kerberos.internal.spnego.principal;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.namenode.kerberos.principal;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.namenode.keytab.file;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.permissions.superusergroup;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.secondary.namenode.kerberos.internal.spnego.principal;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.secondary.namenode.kerberos.principal;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.secondary.namenode.keytab.file;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.web.authentication.kerberos.keytab;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.web.authentication.kerberos.principal;  Ignoring.

857349 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.hdfs.BlockReaderLocal - The short-circuit local reads feature cannot be used because libhadoop cannot be loaded.

857356 [flink-akka.actor.default-dispatcher-19] INFO org.apache.flink.yarn.YarnJobManager - Stopping JobManager akka.tcp://flink@...c.gs.com:33812/user/jobmanager.

857357 [flink-akka.actor.default-dispatcher-21] INFO org.apache.flink.runtime.executiongraph.ExecutionGraph - Job Flink Java Job at Tue May 01 17:58:37 EDT 2018 (1673e636d863ff81916b47c4296ed026) switched from state RUNNING to SUSPENDED.

java.lang.Exception: The JobManager is shutting down.

            at org.apache.flink.runtime.jobmanager.JobManager.postStop(JobManager.scala:240)

            at akka.actor.Actor$class.aroundPostStop(Actor.scala:477)

            at org.apache.flink.runtime.jobmanager.JobManager.aroundPostStop(JobManager.scala:125)

            at akka.actor.dungeon.FaultHandling$class.akka$actor$dungeon$FaultHandling$$finishTerminate(FaultHandling.scala:210)

            at akka.actor.dungeon.FaultHandling$class.terminate(FaultHandling.scala:172)

            at akka.actor.ActorCell.terminate(ActorCell.scala:369)

            at akka.actor.ActorCell.invokeAll$1(ActorCell.scala:462)

            at akka.actor.ActorCell.systemInvoke(ActorCell.scala:478)

            at akka.dispatch.Mailbox.processAllSystemMessages(Mailbox.scala:263)

            at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:241)

            at akka.dispatch.Mailbox.run(Mailbox.scala:220)

            at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:397)

            at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)

            at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)

            at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)

            at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)

 

Regina Chan

Goldman Sachs – Enterprise Platforms, Data Architecture

30 Hudson Street, 37th floor | Jersey City, NY 07302 (  (212) 902-5697

 

 
Newport, Billy
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RE: Lost JobManager

Newport, Billy

It’s standard 1.3.2 on Java 7. We don’t use custom flink builds, just pull down whats in maven.

 

 

From: Stephan Ewen [mailto:[hidden email]]
Sent: Friday, May 11, 2018 2:27 PM
To: [hidden email]
Cc: Chan, Regina [Tech]; Newport, Billy [Tech]; Fabian Hueske
Subject: Re: Lost JobManager

 

Hi!

 

This somehow looks like the YARN shutdown call overtakes the call that marks the Job as successful. That should not be the case.

 

Looking at the logs, you are running a Java 7 installation, so I assume this must be some Flink 1.3.x based build. Can you let us know which version this is based on exactly?

 

Best,
Stephan

 

 

 

On Tue, May 8, 2018 at 9:20 PM, Fabian Hueske <[hidden email]> wrote:

Hi,

I noticed that you configured the Akka framesize to 2GB (the default being 10MB).
This appears like quite a lot to me and might be causing problems since the exceptions indicate an Akka timeout issue.

Did configure the framesize for a particular reason that high?

It seems that you are running a custom build of Flink. Which version did you base your build on?

Best, Fabian

 

2018-05-08 17:41 GMT+02:00 Chan, Regina <[hidden email]>:

There’s no collect() explicitly from me. It has a cogroup operator before writing to DataSink.

 

 

From: Fabian Hueske [mailto:[hidden email]]
Sent: Monday, May 07, 2018 6:31 AM
To: Chan, Regina [Tech]
Cc: [hidden email]; Newport, Billy [Tech]
Subject: Re: Lost JobManager

 

Hi Regina,

I see from the logs that you are using the DataSet API.

Are you trying to fetch a large result to your client using the collect() method?

Best, Fabian

 

2018-05-02 0:38 GMT+02:00 Chan, Regina <[hidden email]>:

Hi,

 

I’m running a single TM with the following params -yn 1 -ys 2 -yjm 36864 -ytm 24576 -yD akka.framesize=2097152000b

 

I keep repeatedly getting this error where I’m losing connection to the JobManager. It’s not clear why, it seems like the job is finishing up until the Datasink but the JobManager is lost before that completes. I’ve attached the jobmanager logs. Snippet further below.

 

org.apache.flink.client.program.ProgramInvocationException: The program execution failed: Couldn't retrieve the JobExecutionResult from the JobManager.

        at org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:478)

        at org.apache.flink.yarn.YarnClusterClient.submitJob(YarnClusterClient.java:205)

        at org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:442)

        at org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:429)

        at org.apache.flink.client.program.ContextEnvironment.execute(ContextEnvironment.java:62)

        at org.apache.flink.api.java.ExecutionEnvironment.execute(ExecutionEnvironment.java:926)

        at com.gs.ep.da.lake.refinerlib.flink.FlowDataBase.execute(FlowDataBase.java:40)

        at com.gs.ep.da.lake.refinerlib.flink.FlowData.runPartialDataFlow(FlowData.java:148)

        at com.gs.ep.da.lake.refinerlib.flink.FlowData.call(FlowData.java:56)

        at com.gs.ep.da.lake.refinerlib.flink.FlowData.call(FlowData.java:24)

        at java.util.concurrent.FutureTask.run(FutureTask.java:262)

        at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)

        at java.util.concurrent.FutureTask.run(FutureTask.java:262)

        at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)

        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)

        at java.lang.Thread.run(Thread.java:745)

Caused by: org.apache.flink.runtime.client.JobExecutionException: Couldn't retrieve the JobExecutionResult from the JobManager.

        at org.apache.flink.runtime.client.JobClient.awaitJobResult(JobClient.java:309)

        at org.apache.flink.runtime.client.JobClient.submitJobAndWait(JobClient.java:396)

        at org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:467)

        ... 15 more

Caused by: org.apache.flink.runtime.client.JobClientActorConnectionTimeoutException: Lost connection to the JobManager.

        at org.apache.flink.runtime.client.JobClientActor.handleMessage(JobClientActor.java:219)

        at org.apache.flink.runtime.akka.FlinkUntypedActor.handleLeaderSessionID(FlinkUntypedActor.java:101)

        at org.apache.flink.runtime.akka.FlinkUntypedActor.onReceive(FlinkUntypedActor.java:68)

        at akka.actor.UntypedActor$$anonfun$receive$1.applyOrElse(UntypedActor.scala:167)

        at akka.actor.Actor$class.aroundReceive(Actor.scala:467)

        at akka.actor.UntypedActor.aroundReceive(UntypedActor.scala:97)

        at akka.actor.ActorCell.receiveMessage(ActorCell.scala:516)

        at akka.actor.ActorCell.invoke(ActorCell.scala:487)

        at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:238)

        at akka.dispatch.Mailbox.run(Mailbox.scala:220)

        at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:397)

        at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)

        at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)

        at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)

        at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)

 

 

--------------

Jobmanager logs below:

 

506735 [flink-akka.actor.default-dispatcher-18] INFO org.apache.flink.runtime.executiongraph.ExecutionGraph - Map (Map at handleMilestoning(MergeTask.java:287)) (1/1) (b688af3e269a022daa48e1db7adf4b34) switched from RUNNING to FINISHED.

857174 [flink-akka.actor.default-dispatcher-19] INFO org.apache.flink.yarn.YarnJobManager - Stopping JobManager with final application status SUCCEEDED and diagnostics: Flink YARN Client requested shutdown

857175 [flink-akka.actor.default-dispatcher-21] INFO org.apache.flink.yarn.YarnFlinkResourceManager - Shutting down cluster with status SUCCEEDED : Flink YARN Client requested shutdown

857176 [flink-akka.actor.default-dispatcher-21] INFO org.apache.flink.yarn.YarnFlinkResourceManager - Unregistering application from the YARN Resource Manager

857180 [flink-akka.actor.default-dispatcher-21] INFO org.apache.hadoop.yarn.client.api.impl.AMRMClientImpl - Waiting for application to be successfully unregistered.

857282 [AMRM Callback Handler Thread] INFO org.apache.hadoop.yarn.client.api.async.impl.AMRMClientAsyncImpl - Interrupted while waiting for queue

java.lang.InterruptedException   at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.reportInterruptAfterWait(AbstractQueuedSynchronizer.java:2017)

            at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2052)

            at java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:442)

            at org.apache.hadoop.yarn.client.api.async.impl.AMRMClientAsyncImpl$CallbackHandlerThread.run(AMRMClientAsyncImpl.java:275)

857323 [flink-akka.actor.default-dispatcher-21] ERROR org.apache.hadoop.yarn.client.api.impl.NMClientImpl - Failed to stop Container container_1524967251050_56140_01_000003when stopping NMClientImpl

857323 [flink-akka.actor.default-dispatcher-21] INFO org.apache.hadoop.yarn.client.api.impl.ContainerManagementProtocolProxy - Closing proxy : d191291-019.dc.gs.com:45454

857326 [flink-akka.actor.default-dispatcher-19] INFO org.apache.flink.yarn.YarnJobManager - Deleting yarn application files under hdfs://d191291/user/delp/.flink/application_1524967251050_56140.

857326 [flink-akka.actor.default-dispatcher-27] ERROR org.apache.flink.yarn.YarnApplicationMasterRunner - Actor akka://flink/user/$b#256544107 terminated, stopping process...

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.http.authentication.kerberos.keytab;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.http.authentication.kerberos.principal;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.http.authentication.signature.secret.file;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.http.authentication.simple.anonymous.allowed;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.http.authentication.type;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.kerberos.kinit.command;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.rpc.protection;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.auth_to_local;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.authentication;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.authorization;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping;  Ignoring.

857345 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.base;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.bind.password.file;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.search.attr.group.name;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.search.attr.member;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.search.filter.group;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: hadoop.security.group.mapping.ldap.url;  Ignoring.

857346 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/core-site.xml:an attempt to override final parameter: ipc.client.fallback-to-simple-auth-allowed;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.block.access.token.enable;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.client.block.write.replace-datanode-on-failure.policy;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.client.read.shortcircuit;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.cluster.administrators;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.datanode.address;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.datanode.http.address;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.datanode.ipc.address;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.datanode.kerberos.principal;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.datanode.keytab.file;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.domain.socket.path;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.hosts;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.hosts.exclude;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.namenode.kerberos.internal.spnego.principal;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.namenode.kerberos.principal;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.namenode.keytab.file;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.permissions.superusergroup;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.secondary.namenode.kerberos.internal.spnego.principal;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.secondary.namenode.kerberos.principal;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.secondary.namenode.keytab.file;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.web.authentication.kerberos.keytab;  Ignoring.

857347 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.conf.Configuration - /gns/software/infra/big-data/hadoop/hdp-2.2.gs6/hadoop/conf/hdfs-site.xml:an attempt to override final parameter: dfs.web.authentication.kerberos.principal;  Ignoring.

857349 [flink-akka.actor.default-dispatcher-19] WARN org.apache.hadoop.hdfs.BlockReaderLocal - The short-circuit local reads feature cannot be used because libhadoop cannot be loaded.

857356 [flink-akka.actor.default-dispatcher-19] INFO org.apache.flink.yarn.YarnJobManager - Stopping JobManager akka.tcp://flink@...:33812/user/jobmanager.

857357 [flink-akka.actor.default-dispatcher-21] INFO org.apache.flink.runtime.executiongraph.ExecutionGraph - Job Flink Java Job at Tue May 01 17:58:37 EDT 2018 (1673e636d863ff81916b47c4296ed026) switched from state RUNNING to SUSPENDED.

java.lang.Exception: The JobManager is shutting down.

            at org.apache.flink.runtime.jobmanager.JobManager.postStop(JobManager.scala:240)

            at akka.actor.Actor$class.aroundPostStop(Actor.scala:477)

            at org.apache.flink.runtime.jobmanager.JobManager.aroundPostStop(JobManager.scala:125)

            at akka.actor.dungeon.FaultHandling$class.akka$actor$dungeon$FaultHandling$$finishTerminate(FaultHandling.scala:210)

            at akka.actor.dungeon.FaultHandling$class.terminate(FaultHandling.scala:172)

            at akka.actor.ActorCell.terminate(ActorCell.scala:369)

            at akka.actor.ActorCell.invokeAll$1(ActorCell.scala:462)

            at akka.actor.ActorCell.systemInvoke(ActorCell.scala:478)

            at akka.dispatch.Mailbox.processAllSystemMessages(Mailbox.scala:263)

            at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:241)

            at akka.dispatch.Mailbox.run(Mailbox.scala:220)

            at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:397)

            at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)

            at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)

            at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)

            at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)

 

Regina Chan

Goldman Sachs – Enterprise Platforms, Data Architecture

30 Hudson Street, 37th floor | Jersey City, NY 07302 (  (212) 902-5697

 

 

 

 
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