"Job submission to the JobManager timed out" on EMR YARN cluster with multiple jobs
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"Job submission to the JobManager timed out" on EMR YARN cluster with multiple jobs
 
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Hello all,
I'm running a Flink plan made up of multiple jobs. The source for my job can be found here if it would help in any way: https://github.com/quinngroup/flink-r1dl/blob/master/src/main/java/com/github/quinngroup/R1DL.java Each of the jobs (except for the first job) depends on files generated by the previous job; I'm running it on an AWS EMR cluster using YARN. When I submit the plan file, the first job runs as planned. After it completes, the second job is submitted by the YARN client: <snip> 02/09/2017 16:39:43 DataSink (CsvSink)(4/5) switched to FINISHED 02/09/2017 16:39:43 Job execution switched to status FINISHED. 2017-02-09 16:40:26,470 INFO org.apache.flink.yarn.YarnClusterClient - Waiting until all TaskManagers have connected Waiting until all TaskManagers have connected 2017-02-09 16:40:26,476 INFO org.apache.flink.yarn.YarnClusterClient - TaskManager status (5/5) TaskManager status (5/5) 2017-02-09 16:40:26,476 INFO org.apache.flink.yarn.YarnClusterClient - All TaskManagers are connected All TaskManagers are connected 2017-02-09 16:40:26,480 INFO org.apache.flink.yarn.YarnClusterClient - Submitting job with JobID: b226f5f18a78bc386bd1b1b6d30515ea. Waiting for job completion. Submitting job with JobID: b226f5f18a78bc386bd1b1b6d30515ea. Waiting for job completion. Connected to JobManager at Actor[akka.tcp://flink@<snip>.ec2.internal:35598/user/jobmanager#68430682] If the input file is small and the first job runs quickly (~1 minute works for me), then the second job runs fine. However, if the input file for my first job is large and the first job takes more than a minute or so to complete, Flink will not acknowledge receiving the next job; the web Flink console does not show any new jobs and Flink logs do not mention receiving any new jobs after the first job has completed. The YARN client's job submission times out after Flink does not respond: Caused by: org.apache.flink.runtime.client.JobClientActorSubmissionTimeoutException: Job submission to the JobManager timed out. You may increase 'akka.client.timeout' in case the JobManager needs more time to configure and confirm the job submission. at org.apache.flink.runtime.client.JobSubmissionClientActor.handleCustomMessage(JobSubmissionClientActor.java:119) at org.apache.flink.runtime.client.JobClientActor.handleMessage(JobClientActor.java:239) at org.apache.flink.runtime.akka.FlinkUntypedActor.handleLeaderSessionID(FlinkUntypedActor.java:88) at org.apache.flink.runtime.akka.FlinkUntypedActor.onReceive(FlinkUntypedActor.java:68) at akka.actor.UntypedActor$$anonfun$receive$1.applyOrElse(UntypedActor.scala:167) I have tried increasing akka.client.timeout to large values such as 1200s (20 minutes), but even then Flink does not acknowledge or execute any other jobs and there is the same timeout error. Does anyone know how I can get Flink to execute all of the jobs properly? Cheers, Geoffrey Mon |
Re: "Job submission to the JobManager timed out" on EMR YARN cluster with multiple jobs
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Just to clarify, is Flink designed to allow submitting multiple jobs from a single program class when using a YARN cluster? I wasn't sure based on the documentation.
Cheers, Geoffrey On Thu, Feb 9, 2017 at 6:34 PM Geoffrey Mon <[hidden email]> wrote:
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Hi Geoffrey, I think the "per job yarn cluster" feature does probably not work for one main() function submitting multiple jobs. If you have a yarn session + regular "flink run" it should work. On Mon, Feb 13, 2017 at 5:37 PM, Geoffrey Mon <[hidden email]> wrote:
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Re: "Job submission to the JobManager timed out" on EMR YARN cluster with multiple jobs
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Hi Robert, Thanks for your reply. I've done some further testing and (hopefully) solved the issue; this turned out to be a red herring. After discovering that the same issue manifested itself when testing on my local machine, I found that multiple jobs can be submitted from a main() function for both temporary and permanent Flink YARN clusters, and that the issue was not with Flink or with YARN, but with my job file. In one part of my job, I need to fill in missing components of a vector with zeroes. I did this by combining the vector DataSet with another DataSet containing indexed zeroes using a union operation and an aggregation operation. In my problematic job, I used ExecutionEnvironment#fromElements to make a DataSet out of an ArrayList of Tuples containing an index and a zero. However, for input files with very large parameters, I needed to generate very large length DataSets of zeroes, and since I was using fromElements, the client needed to send the Flink runtime all of the elements with which to create the DataSet (lots and lots of zeroes). This caused the job to time out before execution, making me think that the job had not been properly received by the runtime. I've replaced this with ExecutionEnvironment#generateSequence and a map function mapping each number of the generated sequence to a tuple with a zero. This has solved the issue and my job seems to be running fine for now. Again, thank you very much for your help. Sincerely, Geoffrey On Wed, Feb 15, 2017 at 7:43 AM Robert Metzger <[hidden email]> wrote:
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Re: "Job submission to the JobManager timed out" on EMR YARN cluster with multiple jobs
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Hi Geoffrey, Thanks for investigating and updating on this. Good to know that it is working! Just to clarify, was your series of jobs submitted to a “yarn session + regular bin/flink run”, or “per job yarn cluster”? I’m asking just to make sure of the limitations Robert mentioned. Cheers, Gordon On February 17, 2017 at 3:37:27 AM, Geoffrey Mon ([hidden email]) wrote:
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Re: "Job submission to the JobManager timed out" on EMR YARN cluster with multiple jobs
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Hi Gordon, I was using a Flink session that lasted as long as the plan jar was still running (which I believe would be a "per job yarn cluster"), by submitting a command to EMR that looked like: flink run -m yarn-cluster -yn 5 [jar] [jar arguments] Cheers, Geoffrey On Fri, Feb 17, 2017 at 12:09 AM Tzu-Li (Gordon) Tai <[hidden email]> wrote:
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