ClassNotFoundException when submitting a job

[ShuQi]

Hi Guys,

Flink version is 1.9.0 and built against HDP.

I got the following exceptions when submitting a job using Hadoop input to read sequence file in hdfs.

Thanks for your help!

Qi

------------------------------------------------------------
 The program finished with the following exception:

org.apache.flink.client.program.ProgramInvocationException: Could not submit job (JobID: 78025b8d9cfd49d2f94190fb11849033)
        at org.apache.flink.client.program.rest.RestClusterClient.submitJob(RestClusterClient.java:244)
        at org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:338)
        at org.apache.flink.client.program.DetachedEnvironment.finalizeExecute(DetachedEnvironment.java:77)
        at org.apache.flink.client.program.ClusterClient.run(ClusterClient.java:280)
        at org.apache.flink.client.cli.CliFrontend.executeProgram(CliFrontend.java:746)
        at org.apache.flink.client.cli.CliFrontend.runProgram(CliFrontend.java:273)
        at org.apache.flink.client.cli.CliFrontend.run(CliFrontend.java:205)
        at org.apache.flink.client.cli.CliFrontend.parseParameters(CliFrontend.java:1010)
        at org.apache.flink.client.cli.CliFrontend.lambda$main$10(CliFrontend.java:1083)
        at java.security.AccessController.doPrivileged(Native Method)
        at javax.security.auth.Subject.doAs(Subject.java:422)
        at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1730)
        at org.apache.flink.runtime.security.HadoopSecurityContext.runSecured(HadoopSecurityContext.java:41)
        at org.apache.flink.client.cli.CliFrontend.main(CliFrontend.java:1083)
Caused by: org.apache.flink.runtime.client.JobSubmissionException: Failed to submit JobGraph.
        at org.apache.flink.client.program.rest.RestClusterClient.lambda$submitJob$8(RestClusterClient.java:382)
        at java.util.concurrent.CompletableFuture.uniExceptionally(CompletableFuture.java:870)
        at java.util.concurrent.CompletableFuture$UniExceptionally.tryFire(CompletableFuture.java:852)
        at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:474)
        at java.util.concurrent.CompletableFuture.completeExceptionally(CompletableFuture.java:1977)
        at org.apache.flink.runtime.concurrent.FutureUtils.lambda$retryOperationWithDelay$8(FutureUtils.java:263)
        at java.util.concurrent.CompletableFuture.uniWhenComplete(CompletableFuture.java:760)
        at java.util.concurrent.CompletableFuture$UniWhenComplete.tryFire(CompletableFuture.java:736)
        at java.util.concurrent.CompletableFuture.postComplete(CompletableFuture.java:474)
        at java.util.concurrent.CompletableFuture.postFire(CompletableFuture.java:561)
        at java.util.concurrent.CompletableFuture$UniCompose.tryFire(CompletableFuture.java:929)
        at java.util.concurrent.CompletableFuture$Completion.run(CompletableFuture.java:442)
        at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
        at java.lang.Thread.run(Thread.java:748)
Caused by: org.apache.flink.runtime.rest.util.RestClientException: [Internal server error., <Exception on server side:
org.apache.flink.runtime.client.JobSubmissionException: Failed to submit job.
        at org.apache.flink.runtime.dispatcher.Dispatcher.lambda$internalSubmitJob$2(Dispatcher.java:333)
        at java.util.concurrent.CompletableFuture.uniHandle(CompletableFuture.java:822)
        at java.util.concurrent.CompletableFuture$UniHandle.tryFire(CompletableFuture.java:797)
        at java.util.concurrent.CompletableFuture$Completion.run(CompletableFuture.java:442)
        at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:40)
        at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(ForkJoinExecutorConfigurator.scala:44)
        at akka.dispatch.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
        at akka.dispatch.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
        at akka.dispatch.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
        at akka.dispatch.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
Caused by: java.lang.RuntimeException: org.apache.flink.runtime.client.JobExecutionException: Could not set up JobManager
        at org.apache.flink.util.function.CheckedSupplier.lambda$unchecked$0(CheckedSupplier.java:36)
        at java.util.concurrent.CompletableFuture$AsyncSupply.run(CompletableFuture.java:1590)
        ... 6 more
Caused by: org.apache.flink.runtime.client.JobExecutionException: Could not set up JobManager
        at org.apache.flink.runtime.jobmaster.JobManagerRunner.<init>(JobManagerRunner.java:152)
        at org.apache.flink.runtime.dispatcher.DefaultJobManagerRunnerFactory.createJobManagerRunner(DefaultJobManagerRunnerFactory.java:83)
        at org.apache.flink.runtime.dispatcher.Dispatcher.lambda$createJobManagerRunner$5(Dispatcher.java:375)
        at org.apache.flink.util.function.CheckedSupplier.lambda$unchecked$0(CheckedSupplier.java:34)
        ... 7 more
Caused by: org.apache.flink.runtime.JobException: Creating the input splits caused an error: org/apache/flink/hadoop2/shaded/com/google/re2j/PatternSyntaxException
        at org.apache.flink.runtime.executiongraph.ExecutionJobVertex.<init>(ExecutionJobVertex.java:270)
        at org.apache.flink.runtime.executiongraph.ExecutionGraph.attachJobGraph(ExecutionGraph.java:907)
        at org.apache.flink.runtime.executiongraph.ExecutionGraphBuilder.buildGraph(ExecutionGraphBuilder.java:230)
        at org.apache.flink.runtime.executiongraph.ExecutionGraphBuilder.buildGraph(ExecutionGraphBuilder.java:106)
        at org.apache.flink.runtime.scheduler.LegacyScheduler.createExecutionGraph(LegacyScheduler.java:207)
        at org.apache.flink.runtime.scheduler.LegacyScheduler.createAndRestoreExecutionGraph(LegacyScheduler.java:184)
        at org.apache.flink.runtime.scheduler.LegacyScheduler.<init>(LegacyScheduler.java:176)
        at org.apache.flink.runtime.scheduler.LegacySchedulerFactory.createInstance(LegacySchedulerFactory.java:70)
        at org.apache.flink.runtime.jobmaster.JobMaster.createScheduler(JobMaster.java:275)
        at org.apache.flink.runtime.jobmaster.JobMaster.<init>(JobMaster.java:265)
        at org.apache.flink.runtime.jobmaster.factories.DefaultJobMasterServiceFactory.createJobMasterService(DefaultJobMasterServiceFactory.java:98)
        at org.apache.flink.runtime.jobmaster.factories.DefaultJobMasterServiceFactory.createJobMasterService(DefaultJobMasterServiceFactory.java:40)
        at org.apache.flink.runtime.jobmaster.JobManagerRunner.<init>(JobManagerRunner.java:146)
        ... 10 more
Caused by: java.lang.NoClassDefFoundError: org/apache/flink/hadoop2/shaded/com/google/re2j/PatternSyntaxException
        at org.apache.hadoop.fs.Globber.doGlob(Globber.java:210)
        at org.apache.hadoop.fs.Globber.glob(Globber.java:149)
        at org.apache.hadoop.fs.FileSystem.globStatus(FileSystem.java:2034)
        at org.apache.hadoop.mapreduce.lib.input.FileInputFormat.singleThreadedListStatus(FileInputFormat.java:303)
        at org.apache.hadoop.mapreduce.lib.input.FileInputFormat.listStatus(FileInputFormat.java:274)
        at org.apache.hadoop.mapreduce.lib.input.SequenceFileInputFormat.listStatus(SequenceFileInputFormat.java:59)
        at org.apache.hadoop.mapreduce.lib.input.FileInputFormat.getSplits(FileInputFormat.java:396)
        at org.apache.flink.api.java.hadoop.mapreduce.HadoopInputFormatBase.createInputSplits(HadoopInputFormatBase.java:159)
        at org.apache.flink.api.java.hadoop.mapreduce.HadoopInputFormatBase.createInputSplits(HadoopInputFormatBase.java:59)
        at org.apache.flink.runtime.executiongraph.ExecutionJobVertex.<init>(ExecutionJobVertex.java:256)
        ... 22 more
Caused by: java.lang.ClassNotFoundException: org.apache.flink.hadoop2.shaded.com.google.re2j.PatternSyntaxException
        at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
        at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
        at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:335)
        at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
        ... 32 more

End of exception on server side>]
        at org.apache.flink.runtime.rest.RestClient.parseResponse(RestClient.java:389)
        at org.apache.flink.runtime.rest.RestClient.lambda$submitRequest$3(RestClient.java:373)
        at java.util.concurrent.CompletableFuture.uniCompose(CompletableFuture.java:952)
        at java.util.concurrent.CompletableFuture$UniCompose.tryFire(CompletableFuture.java:926)
        ... 4 more